JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VNN1_chr6_132675849_132719055	0/0	t0006	2312	8	0	1	0	2	5	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0007	2312	6	1	3	1	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0008	2312	5	5	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0009	2314	5	5	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0010	2312	4	4	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0011	2312	4	0	3	0	1	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0012	2314	4	4	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0013	2312	2	2	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0014	2312	2	2	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0015	2312	2	2	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0016	2312	2	0	0	2	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0017	2312	2	2	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0018	2312	2	0	0	2	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0019	2312	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0020	2312	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0021	2314	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0022	2312	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0023	2312	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0024	2312	1	0	1	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0025	2312	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0026	2312	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0027	2312	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0028	2312	1	0	0	0	1	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0029	2312	1	0	1	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0030	2312	1	0	0	0	0	1	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0031	2312	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0032	2314	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0033	2314	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0034	2314	1	1	0	0	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN1_chr6_132675849_132719055	0/0	t0035	2312	1	0	0	1	0	0	copy fasta	VNN1	chr6	132675849	132719055
VNN2_chr6_132738870_132762904	1/1	t0001	452	378	89	71	151	17	48	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	t0002	452	38	6	2	29	1	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	t0003	452	8	0	7	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	t0004	452	7	0	0	7	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	t0005	452	3	3	0	0	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	t0006	452	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VNN2_chr6_132738870_132762904	0/0	t0007	452	1	0	0	1	0	0	copy fasta	VNN2	chr6	132738870	132762904
VOPP1_chr7_55465613_55577502	1/0	t0001	2421	130	30	17	61	4	17	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0002	2421	64	15	11	22	6	10	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/1	t0003	2421	55	27	7	14	3	3	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0004	2421	48	1	10	31	1	5	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0005	2421	7	7	0	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0006	2421	3	1	1	0	0	1	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0007	2421	3	3	0	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0008	2404	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0009	2421	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0010	2421	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0011	2421	1	0	0	1	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0012	2421	1	0	1	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0013	2421	1	1	0	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502