JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VOPP1_chr7_55465613_55577502	0/0	t0014	2421	1	0	1	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VOPP1_chr7_55465613_55577502	0/0	t0015	2421	1	1	0	0	0	0	copy fasta	VOPP1	chr7	55465613	55577502
VPREB1_chr22_22239786_22250515	0/1	t0001	207	247	37	51	129	8	21	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	1/0	t0002	207	74	10	13	31	3	16	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	t0003	207	60	10	2	44	1	3	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	t0004	207	43	25	11	0	2	5	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	t0005	207	19	15	1	0	0	3	copy fasta	VPREB1	chr22	22239786	22250515
VPREB1_chr22_22239786_22250515	0/0	t0006	207	1	1	0	0	0	0	copy fasta	VPREB1	chr22	22239786	22250515
VPREB3_chr22_23747743_23759425	1/1	t0001	196	433	98	80	191	16	46	copy fasta	VPREB3	chr22	23747743	23759425
VPREB3_chr22_23747743_23759425	0/0	t0002	212	1	0	0	1	0	0	copy fasta	VPREB3	chr22	23747743	23759425
VPS11_chr11_119062818_119086972	1/1	t0001	356	240	53	41	104	13	27	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	t0002	356	115	41	27	29	3	15	copy fasta	VPS11	chr11	119062818	119086972
VPS11_chr11_119062818_119086972	0/0	t0003	356	1	0	0	1	0	0	copy fasta	VPS11	chr11	119062818	119086972
VPS13A_chr9_77172534_77426537	0/0	t0001	5703	65	2	14	38	1	10	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0002	5702	62	11	5	39	1	6	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0003	5703	41	3	0	37	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/1	t0004	5701	27	7	5	9	1	4	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0005	5701	21	9	4	5	1	2	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0006	5703	21	1	8	6	2	4	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0007	5699	12	9	3	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0008	5702	7	0	0	7	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0009	5701	6	0	4	0	0	2	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0010	5701	6	5	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0011	5702	6	6	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0012	5698	4	1	3	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0013	5700	4	2	1	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	1/0	t0014	5703	4	0	0	1	1	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0015	5702	4	0	4	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0016	5703	4	4	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0017	5697	4	4	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0018	5703	3	0	0	2	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0019	5703	3	0	0	3	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0020	5703	3	0	0	3	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0021	5701	2	0	0	0	0	2	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0022	5702	2	2	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0023	5701	2	0	1	0	0	1	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0024	5699	2	0	2	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0025	5701	2	0	0	2	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0026	5703	2	0	0	0	0	2	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0027	5702	2	0	0	2	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0028	5702	2	0	2	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0029	5703	2	0	0	2	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0030	5682	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0031	5701	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0032	5699	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0033	5700	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0034	5700	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0035	5700	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0036	5703	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0037	5703	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537