JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS13A_chr9_77172534_77426537	0/0	t0038	5702	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0039	5702	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0040	5702	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0041	5702	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0042	5702	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0043	5702	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0044	5703	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0045	5699	1	0	0	1	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0046	5691	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0047	5703	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0048	5703	1	0	0	0	1	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0049	5703	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0050	5684	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0051	5703	1	0	1	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13A_chr9_77172534_77426537	0/0	t0052	5703	1	1	0	0	0	0	copy fasta	VPS13A	chr9	77172534	77426537
VPS13B_chr8_99008274_99882580	0/0	t0001	2015	49	12	12	22	2	1	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	1/1	t0002	2018	39	4	15	15	3	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0003	2017	14	3	3	8	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0004	2012	11	5	3	2	0	1	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0005	2020	7	6	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0006	2012	6	6	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0007	2020	2	2	0	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0008	2021	2	0	0	0	2	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0009	1992	2	0	1	0	1	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0010	2076	1	0	1	0	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13B_chr8_99008274_99882580	0/0	t0011	2018	1	0	0	1	0	0	copy fasta	VPS13B	chr8	99008274	99882580
VPS13C_chr15_61847389_62065447	0/1	t0001	2142	155	24	30	79	5	16	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0002	2141	68	13	17	23	6	9	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	1/0	t0003	2142	51	16	4	30	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0004	2142	15	3	3	7	0	2	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0005	2141	13	3	1	8	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0006	2143	9	4	1	4	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0007	2142	3	0	0	3	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0008	2141	3	0	0	2	1	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0009	2141	3	3	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0010	2142	3	3	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0011	2142	3	0	3	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0012	2142	3	0	0	3	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0013	2142	3	0	0	2	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0014	2143	3	3	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0015	2141	2	0	0	0	0	2	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0016	2142	2	1	1	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0017	2142	2	2	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0018	2143	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0019	2141	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0020	2141	1	0	0	0	0	1	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0021	2142	1	1	0	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0022	2142	1	0	1	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0023	2142	1	0	0	1	0	0	copy fasta	VPS13C	chr15	61847389	62065447
VPS13C_chr15_61847389_62065447	0/0	t0024	2142	1	0	1	0	0	0	copy fasta	VPS13C	chr15	61847389	62065447