JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS13D_chr1_12225030_12517047	0/0	t0047	3193	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	t0048	3191	1	0	0	1	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS13D_chr1_12225030_12517047	0/0	t0049	3197	1	0	1	0	0	0	copy fasta	VPS13D	chr1	12225030	12517047
VPS16_chr20_2835745_2871732	1/1	t0001	189	343	83	48	155	13	42	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	t0002	189	28	2	12	13	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	t0003	189	27	0	3	23	1	0	copy fasta	VPS16	chr20	2835745	2871732
VPS16_chr20_2835745_2871732	0/0	t0004	189	10	1	1	7	0	1	copy fasta	VPS16	chr20	2835745	2871732
VPS18_chr15_40889450_40908975	1/1	t0001	954	295	65	52	133	12	31	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0002	953	58	18	8	20	2	10	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0003	956	30	4	3	21	0	2	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0004	954	7	0	0	7	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0005	954	3	0	3	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0006	954	2	2	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0007	955	2	0	0	2	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0008	954	2	2	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0009	954	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0010	954	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0011	954	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0012	954	1	0	0	1	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0013	954	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0014	954	1	0	0	0	0	1	copy fasta	VPS18	chr15	40889450	40908975
VPS18_chr15_40889450_40908975	0/0	t0015	953	1	1	0	0	0	0	copy fasta	VPS18	chr15	40889450	40908975
VPS25_chr17_42768449_42784599	1/1	t0001	558	277	84	58	86	14	33	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	t0002	558	14	4	0	6	0	4	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	t0003	558	1	1	0	0	0	0	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	t0004	558	1	0	0	0	0	1	copy fasta	VPS25	chr17	42768449	42784599
VPS25_chr17_42768449_42784599	0/0	t0005	558	1	1	0	0	0	0	copy fasta	VPS25	chr17	42768449	42784599
VPS26A_chr10_69119178_69179412	0/0	t0001	3248	77	7	7	49	5	9	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	1/0	t0002	3244	56	31	4	16	0	4	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0003	3244	54	0	2	48	0	4	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/1	t0004	3248	35	1	9	14	3	7	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0005	3248	26	5	5	9	0	7	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0006	3251	23	0	8	5	4	6	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0007	3251	11	11	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0008	3254	10	10	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0009	3244	9	8	1	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0010	3244	4	0	3	0	1	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0011	3244	4	0	1	0	1	2	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0012	3248	3	0	1	2	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0013	3248	3	3	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0014	3251	2	0	2	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0015	3244	2	2	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0016	3244	2	0	0	2	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0017	3244	2	2	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0018	3248	2	0	2	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0019	3248	2	2	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0020	3244	1	0	0	1	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0021	3244	1	1	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0022	3248	1	0	0	0	0	1	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0023	3244	1	0	0	1	0	0	copy fasta	VPS26A	chr10	69119178	69179412