JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS26A_chr10_69119178_69179412	0/0	t0024	3251	1	0	1	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0025	3244	1	0	0	1	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0026	3248	1	1	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0027	3254	1	1	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26A_chr10_69119178_69179412	0/0	t0028	3246	1	1	0	0	0	0	copy fasta	VPS26A	chr10	69119178	69179412
VPS26B_chr11_134219671_134252788	0/1	t0001	2651	142	37	33	56	6	9	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0002	2651	92	10	30	40	5	7	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0003	2651	72	4	12	43	2	11	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	1/0	t0004	2651	45	1	1	35	1	6	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0005	2651	16	16	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0006	2651	11	7	1	0	2	1	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0007	2651	7	7	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0008	2651	6	0	1	1	0	4	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0009	2651	5	5	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0010	2651	4	3	1	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0011	2651	4	0	0	1	0	3	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0012	2651	3	0	0	3	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0013	2651	3	0	0	3	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0014	2651	3	0	1	0	0	2	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0015	2651	2	2	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0016	2651	2	2	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0017	2651	2	0	0	2	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0018	2651	2	0	0	2	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0019	2651	1	1	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0020	2651	1	1	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0021	2651	1	1	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0022	2651	1	0	0	0	0	1	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0023	2651	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0024	2651	1	1	0	0	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0025	2651	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0026	2651	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26B_chr11_134219671_134252788	0/0	t0027	2651	1	0	0	1	0	0	copy fasta	VPS26B	chr11	134219671	134252788
VPS26C_chr21_37218422_37272334	0/0	t0001	2162	137	20	23	68	6	20	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	1/0	t0002	2163	95	25	13	41	3	12	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/1	t0003	2163	73	14	15	34	4	5	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0004	2163	24	6	7	10	0	1	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0005	2163	20	5	5	10	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0006	2163	13	8	5	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0007	2163	7	2	1	1	3	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0008	2163	5	5	0	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0009	2163	4	2	2	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0010	2162	4	4	0	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0011	2163	3	0	3	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0012	2163	2	0	1	1	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0013	2163	2	0	0	0	0	2	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0014	2163	1	0	0	1	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0015	2163	1	1	0	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0016	2162	1	1	0	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0017	2163	1	0	0	0	0	1	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0018	2163	1	0	1	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334