JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS26C_chr21_37218422_37272334	0/0	t0019	2163	1	0	0	0	0	1	copy fasta	VPS26C	chr21	37218422	37272334
VPS26C_chr21_37218422_37272334	0/0	t0020	2162	1	1	0	0	0	0	copy fasta	VPS26C	chr21	37218422	37272334
VPS28_chr8_144418617_144433548	1/1	t0001	283	375	72	69	182	12	38	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	t0002	283	12	12	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	t0003	283	12	5	4	0	1	2	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	t0004	283	6	5	1	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	t0005	283	1	1	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	t0006	283	1	1	0	0	0	0	copy fasta	VPS28	chr8	144418617	144433548
VPS28_chr8_144418617_144433548	0/0	t0007	283	1	0	0	0	1	0	copy fasta	VPS28	chr8	144418617	144433548
VPS29_chr12_110486083_110507111	0/0	t0001	983	156	20	27	81	8	20	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	1/1	t0002	983	134	59	35	19	5	14	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	t0003	984	6	0	5	1	0	0	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	t0004	983	5	5	0	0	0	0	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	t0005	983	3	3	0	0	0	0	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	t0006	983	3	0	0	3	0	0	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	t0007	983	2	0	1	0	1	0	copy fasta	VPS29	chr12	110486083	110507111
VPS29_chr12_110486083_110507111	0/0	t0008	983	1	1	0	0	0	0	copy fasta	VPS29	chr12	110486083	110507111
VPS33A_chr12_122224564_122271494	1/1	t0001	2769	176	34	56	56	7	21	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0002	2769	97	1	15	61	5	15	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0003	2769	19	19	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0004	2761	11	11	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0005	2768	8	8	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0006	2769	8	0	0	8	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0007	2769	4	1	1	0	0	2	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0008	2769	4	0	0	4	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0009	2769	3	2	1	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0010	2769	3	3	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0011	2769	2	0	0	2	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0012	2769	2	2	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0013	2769	2	2	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0014	2768	1	0	1	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0015	2769	1	0	0	0	0	1	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0016	2769	1	1	0	0	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0017	2769	1	0	0	1	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0018	2769	1	0	0	1	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0019	2769	1	0	0	1	0	0	copy fasta	VPS33A	chr12	122224564	122271494
VPS33A_chr12_122224564_122271494	0/0	t0020	2769	1	0	0	0	0	1	copy fasta	VPS33A	chr12	122224564	122271494
VPS33B_chr15_90993673_91027594	0/0	t0001	648	301	78	42	147	2	32	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	1/1	t0002	648	54	6	22	0	8	16	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	t0003	648	10	0	0	10	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	t0004	648	3	3	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	t0005	648	3	3	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	t0006	648	1	0	0	1	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	t0007	648	1	1	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS33B_chr15_90993673_91027594	0/0	t0008	648	1	1	0	0	0	0	copy fasta	VPS33B	chr15	90993673	91027594
VPS35L_chr16_19550703_19706163	1/1	t0001	715	243	57	44	100	8	32	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	t0002	715	27	25	2	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	t0003	715	4	4	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	t0004	715	3	0	0	3	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	t0005	715	3	3	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163