JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS35L_chr16_19550703_19706163	0/0	t0006	715	3	0	0	3	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35L_chr16_19550703_19706163	0/0	t0007	715	1	1	0	0	0	0	copy fasta	VPS35L	chr16	19550703	19706163
VPS35_chr16_46651132_46694178	0/1	t0001	4389	53	15	15	5	6	11	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0002	4390	29	6	6	14	1	2	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0003	4388	22	4	10	0	2	6	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0004	4390	21	1	10	9	1	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0005	4387	20	14	4	1	0	1	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0006	4389	14	6	0	8	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0007	4385	11	0	0	1	0	10	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	1/0	t0008	4386	7	5	1	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0009	4386	5	1	2	2	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0010	4391	4	0	1	3	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0011	4387	4	4	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0012	4386	3	1	0	1	0	1	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0013	4389	2	0	0	2	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0014	4385	2	0	1	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0015	4387	2	2	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0016	4386	2	2	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0017	4390	2	0	0	2	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0018	4390	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0019	4389	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0020	4386	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0021	4390	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0022	4385	1	0	0	0	0	1	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0023	4389	1	0	1	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0024	4389	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0025	4389	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0026	4389	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0027	4388	1	0	1	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0028	4389	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0029	4387	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0030	4387	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0031	4387	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0032	4387	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0033	4386	1	0	0	1	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS35_chr16_46651132_46694178	0/0	t0034	4386	1	1	0	0	0	0	copy fasta	VPS35	chr16	46651132	46694178
VPS36_chr13_52407606_52455634	0/0	t0001	3265	153	28	41	69	6	9	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	1/1	t0002	3265	124	36	23	40	5	18	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0003	3264	13	0	2	10	0	1	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0004	3265	7	0	1	4	0	2	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0005	3264	5	0	0	5	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0006	3264	4	4	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0007	3265	4	3	1	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0008	3265	3	0	0	3	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0009	3267	2	1	0	0	0	1	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0010	3265	2	0	0	2	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0011	3264	2	0	1	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0012	3265	2	0	0	2	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0013	3265	2	2	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0014	3264	1	0	0	0	0	1	copy fasta	VPS36	chr13	52407606	52455634