Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
C15orf40_chr15_82989817_83016639	0/0	t0110	10795	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0111	10805	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0112	10813	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0113	10813	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0114	10787	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0115	10788	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0116	10788	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0117	10788	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0118	10801	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0119	10787	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0120	10788	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0121	10787	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0122	10788	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/1	t0123	10781	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0124	10787	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0125	10814	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0126	10813	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0127	10761	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0128	10813	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0129	10813	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0130	10812	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0131	10812	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0132	10812	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0133	10812	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0134	10798	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0135	10812	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0136	10763	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0137	10812	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0138	10801	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0139	10801	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0140	10802	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0141	10801	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0142	10801	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0143	10800	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0144	10800	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0145	10800	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0146	10669	1	0	0	1	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0147	10667	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0148	10786	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0149	10666	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0150	10761	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0151	10670	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0152	10670	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0153	10787	1	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0154	10813	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0155	10814	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0156	10813	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0157	10795	1	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0158	10669	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0159	10668	1	0	0	0	1	copy fasta	C15orf40	chr15	82989817	83016639