JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS36_chr13_52407606_52455634	0/0	t0015	3263	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0016	3265	1	0	0	0	0	1	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0017	3265	1	0	0	0	1	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0018	3264	1	0	0	0	0	1	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0019	3265	1	0	1	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0020	3265	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0021	3265	1	0	0	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0022	3265	1	0	0	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0023	3265	1	0	0	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0024	3265	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0025	3265	1	0	0	1	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0026	3265	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0027	3265	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS36_chr13_52407606_52455634	0/0	t0028	3267	1	1	0	0	0	0	copy fasta	VPS36	chr13	52407606	52455634
VPS37A_chr8_17241958_17303024	0/0	t0001	3328	70	18	11	38	1	2	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0002	3329	68	18	7	31	0	12	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/1	t0003	3326	59	0	14	28	6	10	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0004	3306	40	0	7	25	1	7	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0005	3326	19	9	0	5	3	2	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0006	3329	14	1	6	0	1	6	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0007	3326	12	0	0	11	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0008	3329	11	10	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0009	3333	10	2	4	0	2	2	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0010	3333	8	8	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0011	3326	7	6	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0012	3333	6	0	0	6	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0013	3329	5	5	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0014	3328	3	0	2	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0015	3328	3	0	0	3	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0016	3326	3	3	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	1/0	t0017	3326	3	2	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0018	3329	3	0	0	3	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0019	3326	2	1	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0020	3343	2	2	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0021	3306	2	0	2	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0022	3328	2	0	2	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0023	3328	2	2	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0024	3326	2	0	0	2	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0025	3333	2	0	0	0	0	2	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0026	3329	2	0	1	0	1	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0027	3326	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0028	3330	1	0	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0029	3329	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0030	3326	1	0	0	0	1	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0031	3326	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0032	3326	1	0	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0033	3326	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0034	3306	1	0	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0035	3329	1	1	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0036	3329	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024