JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS37A_chr8_17241958_17303024	0/0	t0037	3329	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0038	3328	1	0	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0039	3329	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0040	3329	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0041	3326	1	1	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0042	3328	1	0	0	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0043	3329	1	0	1	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0044	3306	1	0	0	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0045	3326	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0046	3329	1	1	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0047	3329	1	1	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0048	3329	1	1	0	0	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0049	3326	1	0	0	0	0	1	copy fasta	VPS37A	chr8	17241958	17303024
VPS37A_chr8_17241958_17303024	0/0	t0050	3326	1	0	0	1	0	0	copy fasta	VPS37A	chr8	17241958	17303024
VPS37B_chr12_122860330_122901124	0/1	t0001	1845	147	42	32	47	8	17	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	1/0	t0002	1849	82	16	6	37	2	20	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0003	1849	9	9	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0004	1849	8	7	1	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0005	1845	4	0	0	4	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0006	1849	2	0	0	2	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0007	1845	1	0	0	1	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0008	1845	1	0	1	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0009	1849	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0010	1845	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0011	1845	1	0	0	0	0	1	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0012	1845	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0013	1849	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0014	1849	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0015	1849	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0016	1845	1	0	0	1	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0017	1849	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0018	1845	1	0	0	1	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0019	1849	1	1	0	0	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37B_chr12_122860330_122901124	0/0	t0020	1849	1	0	0	1	0	0	copy fasta	VPS37B	chr12	122860330	122901124
VPS37C_chr11_61125257_61166426	0/1	t0001	1606	129	57	19	24	7	21	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	1/0	t0002	1606	44	2	28	0	7	6	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0003	1606	19	18	1	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0004	1606	3	3	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0005	1606	3	0	3	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0006	1606	2	2	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0007	1606	2	0	0	0	2	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0008	1606	2	2	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0009	1606	1	0	0	0	0	1	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0010	1606	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0011	1606	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0012	1606	1	0	1	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0013	1606	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0014	1606	1	1	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0015	1606	1	1	0	0	0	0	copy fasta	VPS37C	chr11	61125257	61166426
VPS37C_chr11_61125257_61166426	0/0	t0016	1606	1	0	0	1	0	0	copy fasta	VPS37C	chr11	61125257	61166426