JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS37D_chr7_73662831_73677110	1/1	t0001	863	269	79	45	115	6	22	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0002	863	93	5	22	35	12	19	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0003	868	6	5	1	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0004	853	3	1	0	2	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0005	873	3	0	3	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0006	863	2	2	0	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0007	863	1	0	0	0	0	1	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0008	863	1	0	0	1	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0009	863	1	0	1	0	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS37D_chr7_73662831_73677110	0/0	t0010	863	1	0	0	1	0	0	copy fasta	VPS37D	chr7	73662831	73677110
VPS39_chr15_42153701_42213304	1/1	t0001	2205	152	7	18	98	6	21	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0002	2205	51	34	7	0	4	6	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0003	2205	50	15	10	21	0	4	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0004	2205	49	19	15	13	0	2	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0005	2205	7	6	1	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0006	2205	6	0	0	6	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0007	2205	3	3	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0008	2205	3	3	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0009	2205	2	0	0	0	0	2	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0010	2205	1	0	1	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0011	2205	1	1	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0012	2205	1	0	1	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0013	2205	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0014	2205	1	0	1	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0015	2205	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0016	2205	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0017	2205	1	1	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0018	2205	1	0	0	1	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0019	2205	1	0	1	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0020	2243	1	1	0	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0021	2205	1	0	0	0	0	1	copy fasta	VPS39	chr15	42153701	42213304
VPS39_chr15_42153701_42213304	0/0	t0022	2205	1	0	1	0	0	0	copy fasta	VPS39	chr15	42153701	42213304
VPS41_chr7_38717974_38914191	0/0	t0001	3291	33	3	21	0	6	3	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	1/0	t0002	3290	33	2	5	21	1	3	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0003	3315	21	8	2	11	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0004	3291	20	11	2	5	1	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0005	3291	16	1	0	14	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0006	3316	11	2	1	7	1	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/1	t0007	3314	10	4	1	2	1	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0008	3290	9	0	3	6	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0009	3292	7	3	3	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0010	3292	7	5	0	0	0	2	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0011	3282	5	4	1	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0012	3296	5	0	0	4	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0013	3318	5	2	1	2	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0014	3291	5	0	0	5	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0015	3305	5	0	2	0	0	3	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0016	3304	5	5	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0017	3291	4	1	3	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0018	3317	4	1	0	2	0	1	copy fasta	VPS41	chr7	38717974	38914191