JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS41_chr7_38717974_38914191	0/0	t0019	3291	4	0	3	0	1	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0020	3282	4	1	1	0	0	2	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0021	3282	4	4	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0022	3290	4	0	3	0	1	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0023	3305	4	0	0	0	1	3	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0024	3320	3	1	0	0	0	2	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0025	3321	3	1	1	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0026	3322	3	0	0	2	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0027	3290	3	0	2	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0028	3297	3	3	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0029	3302	2	1	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0030	3325	2	1	0	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0031	3281	2	2	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0032	3290	2	0	0	2	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0033	3291	2	0	2	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0034	3292	2	1	1	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0035	3295	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0036	3291	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0037	3292	1	0	0	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0038	3281	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0039	3314	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0040	3304	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0041	3312	1	0	0	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0042	3313	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0043	3324	1	0	0	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0044	3313	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0045	3316	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0046	3301	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0047	3282	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0048	3292	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0049	3291	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0050	3290	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0051	3281	1	0	0	0	1	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0052	3291	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0053	3292	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0054	3291	1	0	0	0	0	1	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0055	3312	1	0	0	1	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0056	3297	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0057	3290	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0058	3296	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0059	3281	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS41_chr7_38717974_38914191	0/0	t0060	3316	1	1	0	0	0	0	copy fasta	VPS41	chr7	38717974	38914191
VPS45_chr1_150062776_150150329	1/1	t0001	616	170	87	28	25	8	20	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	t0002	616	2	2	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	t0003	616	1	0	0	1	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	t0004	616	1	1	0	0	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	t0005	616	1	0	0	1	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS45_chr1_150062776_150150329	0/0	t0006	616	1	0	0	1	0	0	copy fasta	VPS45	chr1	150062776	150150329
VPS4A_chr16_69306350_69331939	1/0	t0001	2793	181	19	40	94	6	21	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/1	t0002	2726	29	8	4	6	3	7	copy fasta	VPS4A	chr16	69306350	69331939