JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS4A_chr16_69306350_69331939	0/0	t0003	2793	18	1	3	14	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0004	2725	17	6	2	7	1	1	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0005	2793	16	16	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0006	2725	13	13	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0007	2726	12	1	0	4	0	7	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0008	2794	12	7	4	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0009	2793	10	0	7	0	3	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0010	2725	9	0	4	2	2	1	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0011	2794	6	6	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0012	2725	4	3	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0013	2726	3	2	0	0	0	1	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0014	2725	3	3	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0015	2793	3	0	3	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0016	2793	3	0	0	0	0	3	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0017	2745	2	0	2	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0018	2726	2	2	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0019	2793	2	1	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0020	2725	2	2	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0021	2793	1	0	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0022	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0023	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0024	2725	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0025	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0026	2726	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0027	2929	1	0	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0028	2793	1	0	0	0	1	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0029	2726	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0030	2725	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0031	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0032	2793	1	0	1	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0033	2793	1	0	0	0	0	1	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0034	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0035	2793	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0036	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0037	2793	1	0	0	1	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0038	2726	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4A_chr16_69306350_69331939	0/0	t0039	2726	1	1	0	0	0	0	copy fasta	VPS4A	chr16	69306350	69331939
VPS4B_chr18_63384190_63427476	0/1	t0001	2005	229	29	32	132	6	29	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	1/0	t0002	2003	93	16	28	26	8	14	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0003	2005	24	18	1	5	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0004	2006	12	11	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0005	2002	5	4	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0006	2005	4	4	0	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0007	2005	3	2	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0008	2005	3	1	2	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0009	2006	2	0	0	2	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0010	2005	1	0	0	1	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0011	2003	1	0	0	0	1	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0012	2005	1	1	0	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0013	2005	1	0	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476