JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS4B_chr18_63384190_63427476	0/0	t0014	2005	1	1	0	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0015	2003	1	0	0	0	1	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0016	2005	1	0	0	1	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0017	2005	1	0	0	1	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0018	2005	1	0	0	0	0	1	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0019	2003	1	0	1	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS4B_chr18_63384190_63427476	0/0	t0020	2005	1	1	0	0	0	0	copy fasta	VPS4B	chr18	63384190	63427476
VPS50_chr7_93227366_93366123	0/1	t0001	2788	145	31	17	75	2	19	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0002	2790	61	9	10	32	1	9	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0003	2789	25	5	0	17	0	3	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0004	2792	16	6	4	3	0	3	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0005	2789	7	0	0	7	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0006	2791	7	2	2	2	1	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0007	2790	6	1	2	3	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	1/0	t0008	2790	6	0	5	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0009	2788	5	5	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0010	2790	5	1	4	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0011	2790	5	4	1	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0012	2790	4	2	1	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0013	2790	3	3	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0014	2790	3	3	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0015	2789	2	0	1	0	0	1	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0016	2788	2	0	0	2	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0017	2789	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0018	2788	1	0	1	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0019	2790	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0020	2788	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0021	2789	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0022	2788	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0023	2788	1	0	0	0	0	1	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0024	2789	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0025	2788	1	0	0	1	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0026	2791	1	0	1	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0027	2792	1	0	1	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0028	2791	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0029	2792	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS50_chr7_93227366_93366123	0/0	t0030	2792	1	1	0	0	0	0	copy fasta	VPS50	chr7	93227366	93366123
VPS51_chr11_65091214_65116862	1/1	t0001	313	347	96	63	135	14	37	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	t0002	313	1	0	0	1	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	t0003	313	1	0	0	0	0	1	copy fasta	VPS51	chr11	65091214	65116862
VPS51_chr11_65091214_65116862	0/0	t0004	313	1	0	1	0	0	0	copy fasta	VPS51	chr11	65091214	65116862
VPS52_chr6_33245278_33276876	0/1	t0001	765	251	80	34	104	11	21	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0002	765	39	1	14	17	1	6	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0003	765	15	10	2	3	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0004	765	7	2	3	0	0	2	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0005	765	3	0	0	2	0	1	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0006	765	3	0	3	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0007	765	3	0	0	3	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0008	765	1	1	0	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0009	765	1	1	0	0	0	0	copy fasta	VPS52	chr6	33245278	33276876