JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS52_chr6_33245278_33276876	0/0	t0010	765	1	1	0	0	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS52_chr6_33245278_33276876	0/0	t0011	765	1	0	0	1	0	0	copy fasta	VPS52	chr6	33245278	33276876
VPS53_chr17_503668_719839	0/0	t0001	10591	9	1	2	1	2	3	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0002	11042	9	0	0	8	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0003	10591	7	1	4	0	2	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0004	10538	6	0	0	6	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0005	10770	5	0	0	5	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0006	10538	5	0	0	5	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0007	10770	4	0	0	4	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0008	10770	4	0	2	2	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0009	10770	4	0	1	3	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0010	10574	3	0	0	3	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0011	11042	3	0	1	0	2	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0012	11042	3	0	3	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	1/0	t0013	10591	3	0	0	0	2	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/1	t0014	10592	3	0	1	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0015	10770	3	0	0	3	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0016	11043	3	0	0	3	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0017	10591	3	0	1	1	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0018	11211	3	0	0	2	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0019	10569	2	0	0	1	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0020	10672	2	0	0	2	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0021	10871	2	0	0	0	0	2	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0022	10487	2	0	0	2	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0023	11043	2	0	2	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0024	10592	2	0	2	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0025	10593	2	0	1	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0026	10593	2	0	2	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0027	10771	2	0	0	2	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0028	11268	2	2	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0029	11368	2	2	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0030	11043	2	2	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0031	10534	2	2	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0032	11210	2	2	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0033	11366	2	2	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0034	11212	2	0	2	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0035	10593	2	0	0	1	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0036	11277	2	0	0	1	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0037	11211	2	0	0	2	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0038	10592	2	1	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0039	10772	1	0	0	0	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0040	10840	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0041	11212	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0042	10607	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0043	10608	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0044	10573	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0045	10569	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0046	10575	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0047	10575	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0048	10771	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839