JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS53_chr17_503668_719839	0/0	t0049	10469	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0050	11369	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0051	10536	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0052	10535	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0053	10872	1	0	0	0	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0054	10526	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0055	10538	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0056	10492	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0057	10826	1	0	0	0	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0058	10771	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0059	10540	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0060	10494	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0061	10541	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0062	11075	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0063	10539	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0064	10590	1	0	0	0	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0065	10590	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0066	10590	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0067	10592	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0068	10592	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0069	11043	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0070	11043	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0071	10637	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0072	10591	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0073	10591	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0074	10591	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0075	10591	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0076	10591	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0077	10591	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0078	10375	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0079	10593	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0080	10593	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0081	10526	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0082	10592	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0083	10594	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0084	11043	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0085	10802	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0086	10769	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0087	11368	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0088	11370	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0089	10608	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0090	10803	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0091	10810	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0092	10771	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0093	10771	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0094	10770	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0095	11370	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0096	11369	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0097	11368	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0098	10908	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839