JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS53_chr17_503668_719839	0/0	t0099	10873	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0100	10539	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0101	10540	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0102	10507	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0103	10538	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0104	10772	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0105	11370	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0106	11042	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0107	11043	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0108	10369	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0109	11075	1	0	0	0	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0110	11042	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0111	11398	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0112	11365	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0113	11042	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0114	11042	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0115	11042	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0116	11075	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0117	11042	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0118	10433	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0119	11075	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0120	11011	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0121	11176	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0122	11211	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0123	10684	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0124	10684	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0125	10592	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0126	11210	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0127	11366	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0128	11043	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0129	11076	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0130	11309	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0131	11243	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0132	11210	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0133	10591	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0134	10535	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0135	10375	1	1	0	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0136	11213	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0137	11344	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0138	11212	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0139	11212	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0140	11244	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0141	11211	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0142	10684	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0143	10559	1	0	0	0	1	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0144	11280	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0145	11016	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0146	11213	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0147	11311	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0148	11278	1	0	0	1	0	0	copy fasta	VPS53	chr17	503668	719839