JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VPS53_chr17_503668_719839	0/0	t0149	10593	1	0	0	0	0	1	copy fasta	VPS53	chr17	503668	719839
VPS53_chr17_503668_719839	0/0	t0150	10770	1	0	1	0	0	0	copy fasta	VPS53	chr17	503668	719839
VPS54_chr2_63887150_64024428	0/1	t0001	1793	183	63	40	44	13	22	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	1/0	t0002	1792	79	8	27	33	3	7	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0003	1793	22	10	2	2	1	7	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0004	1793	5	4	1	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0005	1793	4	0	4	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0006	1793	3	3	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0007	1790	3	2	0	0	1	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0008	1793	2	0	0	0	0	2	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0009	1793	1	1	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0010	1792	1	0	0	1	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS54_chr2_63887150_64024428	0/0	t0011	1793	1	1	0	0	0	0	copy fasta	VPS54	chr2	63887150	64024428
VPS72_chr1_151171304_151195197	1/1	t0001	417	404	88	67	185	18	44	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	t0002	417	3	2	1	0	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS72_chr1_151171304_151195197	0/0	t0003	417	1	0	0	1	0	0	copy fasta	VPS72	chr1	151171304	151195197
VPS8_chr3_184807166_185057604	0/0	t0001	728	121	38	18	47	6	12	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	1/0	t0002	728	101	22	19	43	3	13	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0003	728	17	11	5	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/1	t0004	728	15	3	6	3	1	1	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0005	728	13	0	4	9	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0006	728	2	2	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0007	728	2	2	0	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0008	728	1	0	0	1	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0009	728	1	0	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS8_chr3_184807166_185057604	0/0	t0010	728	1	0	1	0	0	0	copy fasta	VPS8	chr3	184807166	185057604
VPS9D1_chr16_89702134_89725898	0/1	t0001	765	370	80	73	153	17	46	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0002	765	46	11	1	32	0	2	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	1/0	t0003	765	6	4	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0004	765	2	0	2	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0005	765	1	1	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0006	765	1	1	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0007	765	1	0	0	0	1	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0008	765	1	1	0	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0009	765	1	0	1	0	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VPS9D1_chr16_89702134_89725898	0/0	t0010	765	1	0	0	1	0	0	copy fasta	VPS9D1	chr16	89702134	89725898
VRK1_chr14_96792382_96886609	1/1	t0001	473	276	86	60	78	10	40	copy fasta	VRK1	chr14	96792382	96886609
VRK1_chr14_96792382_96886609	0/0	t0002	473	1	1	0	0	0	0	copy fasta	VRK1	chr14	96792382	96886609
VRK1_chr14_96792382_96886609	0/0	t0003	473	1	1	0	0	0	0	copy fasta	VRK1	chr14	96792382	96886609
VRK2_chr2_58041806_58164871	0/0	t0001	247	171	76	25	51	6	13	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	1/1	t0002	247	157	8	38	83	6	20	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	t0003	247	7	1	3	0	2	1	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	t0004	247	3	3	0	0	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	t0005	247	1	0	0	1	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK2_chr2_58041806_58164871	0/0	t0006	258	1	0	0	1	0	0	copy fasta	VRK2	chr2	58041806	58164871
VRK3_chr19_49971468_50030372	1/1	t0001	498	244	45	43	117	7	30	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	t0002	496	90	7	13	59	2	9	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	t0003	496	7	7	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	t0004	498	4	4	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	t0005	496	2	0	0	0	1	1	copy fasta	VRK3	chr19	49971468	50030372