Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C15orf40_chr15_82989817_83016639	0/0	t0160	10669	1	0	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0161	10812	1	0	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0162	10668	1	0	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0163	10795	1	0	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0164	10800	1	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0165	10799	1	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	1/0	t0166	10813	1	0	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0167	10668	1	0	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0168	10668	1	0	0	1	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0169	10814	1	0	1	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0170	10814	1	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0171	10809	1	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0172	10808	1	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf40_chr15_82989817_83016639	0/0	t0173	10808	1	1	0	0	0	0	copy fasta	C15orf40	chr15	82989817	83016639
C15orf48_chr15_45425610_45438340	1/1	t0001	398	415	94	76	191	8	44	copy fasta	C15orf48	chr15	45425610	45438340
C15orf48_chr15_45425610_45438340	0/0	t0002	398	2	0	0	2	0	0	copy fasta	C15orf48	chr15	45425610	45438340
C15orf48_chr15_45425610_45438340	0/0	t0003	398	1	1	0	0	0	0	copy fasta	C15orf48	chr15	45425610	45438340
C15orf48_chr15_45425610_45438340	0/0	t0004	398	1	1	0	0	0	0	copy fasta	C15orf48	chr15	45425610	45438340
C15orf48_chr15_45425610_45438340	0/0	t0005	398	1	0	0	1	0	0	copy fasta	C15orf48	chr15	45425610	45438340
C15orf61_chr15_67516131_67535146	0/0	t0001	3720	134	9	22	83	5	15	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0002	3720	75	26	12	35	1	1	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/1	t0003	3720	67	24	14	10	5	13	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0004	3720	66	4	8	44	3	7	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0005	3720	20	0	0	19	0	1	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0006	3720	9	9	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0007	3720	6	0	2	4	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0008	3720	5	5	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0009	3720	4	4	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0010	3720	4	4	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0011	3720	2	0	0	2	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0012	3720	2	0	0	0	0	2	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0013	3720	2	0	0	2	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0014	3720	2	2	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0015	3720	2	0	0	0	0	2	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0016	3720	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0017	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0018	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0019	3720	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0020	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0021	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0022	3720	1	0	0	0	0	1	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0023	3720	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0024	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	1/0	t0025	3720	1	0	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0026	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0027	3720	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0028	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0029	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0030	3720	1	1	0	0	0	0	copy fasta	C15orf61	chr15	67516131	67535146
C15orf61_chr15_67516131_67535146	0/0	t0031	3720	1	0	0	1	0	0	copy fasta	C15orf61	chr15	67516131	67535146