JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VRK3_chr19_49971468_50030372	0/0	t0006	498	1	0	1	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	t0007	496	1	0	1	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRK3_chr19_49971468_50030372	0/0	t0008	496	1	1	0	0	0	0	copy fasta	VRK3	chr19	49971468	50030372
VRTN_chr14_74343471_74365008	1/0	t0001	1299	221	56	45	85	12	22	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/1	t0002	1299	167	9	30	97	5	25	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0003	1299	20	20	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0004	1299	4	0	0	4	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0005	1299	3	0	0	3	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0006	1299	3	0	0	3	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0007	1299	2	2	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0008	1299	1	0	0	0	0	1	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0009	1299	1	1	0	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0010	1299	1	0	0	0	1	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0011	1299	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0012	1299	1	0	1	0	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0013	1299	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0014	1299	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VRTN_chr14_74343471_74365008	0/0	t0015	1299	1	0	0	1	0	0	copy fasta	VRTN	chr14	74343471	74365008
VSIG10L2_chr11_125941044_125961319	1/1	t0001	418	446	96	80	208	12	48	copy fasta	VSIG10L2	chr11	125941044	125961319
VSIG10L_chr19_51326541_51347139	1/1	t0001	1086	302	59	54	135	12	40	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0002	1086	80	2	15	54	3	6	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0003	1086	29	12	5	7	3	2	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0004	1086	11	10	1	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0005	1086	6	0	0	6	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0006	1086	5	4	1	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0007	1086	4	0	0	4	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0008	1086	3	3	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0009	1086	3	3	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0010	1086	2	0	0	2	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0011	1086	1	0	1	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0012	1086	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0013	1086	1	1	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0014	1086	1	0	1	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0015	1086	1	1	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0016	1086	1	0	0	1	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10L_chr19_51326541_51347139	0/0	t0017	1086	1	1	0	0	0	0	copy fasta	VSIG10L	chr19	51326541	51347139
VSIG10_chr12_118058593_118109011	0/0	t0001	3388	57	8	7	37	0	5	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0002	3391	43	15	9	14	1	4	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0003	3389	26	0	7	13	0	6	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0004	3389	18	5	0	10	0	3	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0005	3392	17	5	6	3	2	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	1/1	t0006	3387	14	7	2	0	2	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0007	3388	12	7	0	5	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0008	3388	12	0	0	12	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0009	3388	11	0	3	6	1	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0010	3388	11	1	6	0	1	3	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0011	3387	10	0	6	0	2	2	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0012	3388	10	0	2	8	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0013	3390	8	1	1	4	1	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0014	3389	7	0	2	5	0	0	copy fasta	VSIG10	chr12	118058593	118109011