JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSIG10_chr12_118058593_118109011	0/0	t0015	3391	7	1	1	5	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0016	3388	6	0	3	3	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0017	3389	6	3	0	3	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0018	3389	6	0	0	5	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0019	3387	5	0	0	5	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0020	3389	5	1	3	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0021	3389	5	1	0	3	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0022	3388	5	0	1	4	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0023	3388	4	0	0	4	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0024	3388	4	4	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0025	3388	4	1	1	0	0	2	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0026	3389	4	1	0	1	0	2	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0027	3389	3	0	1	0	1	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0028	3388	3	3	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0029	3390	3	3	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0030	3390	3	0	0	1	1	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0031	3391	3	0	0	3	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0032	3387	2	0	0	1	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0033	3387	2	0	1	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0034	3387	2	0	1	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0035	3388	2	0	0	2	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0036	3388	2	0	2	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0037	3389	2	0	0	2	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0038	3389	2	2	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0039	3389	2	0	0	0	2	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0040	3389	2	0	0	0	1	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0041	3390	2	2	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0042	3388	2	2	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0043	3390	2	0	0	1	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0044	3393	2	0	1	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0045	3392	2	1	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0046	3388	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0047	3389	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0048	3389	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0049	3386	1	0	0	0	1	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0050	3388	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0051	3387	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0052	3386	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0053	3388	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0054	3385	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0055	3387	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0056	3389	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0057	3389	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0058	3388	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0059	3387	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0060	3389	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0061	3387	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0062	3387	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0063	3388	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0064	3388	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011