JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSIG10_chr12_118058593_118109011	0/0	t0065	3388	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0066	3388	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0067	3389	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0068	3388	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0069	3388	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0070	3388	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0071	3390	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0072	3388	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0073	3388	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0074	3389	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0075	3389	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0076	3390	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0077	3389	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0078	3390	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0079	3390	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0080	3389	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0081	3389	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0082	3389	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0083	3389	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0084	3389	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0085	3390	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0086	3390	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0087	3390	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0088	3390	1	0	0	0	0	1	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0089	3390	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0090	3391	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0091	3391	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0092	3391	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0093	3391	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0094	3392	1	0	1	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0095	3393	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0096	3392	1	0	0	1	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG10_chr12_118058593_118109011	0/0	t0097	3392	1	1	0	0	0	0	copy fasta	VSIG10	chr12	118058593	118109011
VSIG1_chrX_108040065_108084184	1/1	t0001	1870	233	48	47	98	12	26	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0002	1867	24	9	5	9	0	1	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0003	1871	16	15	0	1	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0004	1870	1	0	1	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0005	1870	1	1	0	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0006	1870	1	0	0	1	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0007	1870	1	1	0	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0008	1870	1	1	0	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0009	1870	1	1	0	0	0	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0010	1870	1	0	0	0	1	0	copy fasta	VSIG1	chrX	108040065	108084184
VSIG1_chrX_108040065_108084184	0/0	t0011	1870	1	0	0	0	0	1	copy fasta	VSIG1	chrX	108040065	108084184
VSIG2_chr11_124742474_124757255	1/1	t0001	180	399	94	72	171	14	46	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	t0002	180	6	0	0	6	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG2_chr11_124742474_124757255	0/0	t0003	180	1	0	0	1	0	0	copy fasta	VSIG2	chr11	124742474	124757255
VSIG4_chrX_66016738_66045080	1/1	t0001	608	195	34	41	78	10	30	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	t0002	608	7	6	0	0	1	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	t0003	608	7	0	0	7	0	0	copy fasta	VSIG4	chrX	66016738	66045080