JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSIG4_chrX_66016738_66045080	0/0	t0004	608	5	0	4	0	0	1	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	t0005	608	2	2	0	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	t0006	608	1	0	0	0	0	1	copy fasta	VSIG4	chrX	66016738	66045080
VSIG4_chrX_66016738_66045080	0/0	t0007	608	1	1	0	0	0	0	copy fasta	VSIG4	chrX	66016738	66045080
VSIG8_chr1_159849316_159867657	1/0	t0001	574	223	62	34	102	5	19	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/1	t0002	574	138	9	29	78	7	14	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0003	574	59	12	16	15	3	13	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0004	574	20	1	3	16	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0005	574	6	6	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0006	574	4	2	0	1	1	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0007	574	3	2	1	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0008	574	1	1	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0009	574	1	0	0	1	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0010	574	1	1	0	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0011	574	1	0	0	1	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIG8_chr1_159849316_159867657	0/0	t0012	574	1	0	1	0	0	0	copy fasta	VSIG8	chr1	159849316	159867657
VSIR_chr10_71742556_71778520	0/0	t0001	3779	51	3	9	38	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0002	3779	38	1	2	33	0	2	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0003	3779	34	3	6	25	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0004	3779	25	0	6	12	4	3	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0005	3779	17	4	8	0	1	4	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	1/0	t0006	3779	14	0	5	5	1	2	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0007	3779	14	1	0	13	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0008	3779	12	0	6	4	1	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0009	3779	12	0	2	9	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0010	3779	9	1	3	3	0	2	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0011	3779	7	2	1	2	0	2	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0012	3779	7	0	1	6	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0013	3779	6	0	0	6	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0014	3779	6	0	1	5	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0015	3779	6	0	1	5	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0016	3779	5	0	0	3	0	2	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0017	3779	5	1	2	1	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0018	3779	5	0	0	5	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0019	3779	5	0	0	4	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0020	3779	5	4	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0021	3779	4	0	0	0	3	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0022	3779	4	0	0	4	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0023	3779	4	0	0	4	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0024	3779	4	1	1	2	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0025	3779	4	2	1	1	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0026	3779	4	4	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0027	3779	4	4	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0028	3779	3	1	1	0	1	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0029	3779	3	0	0	0	0	3	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0030	3779	3	2	1	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0031	3779	3	3	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0032	3779	3	0	2	0	0	1	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0033	3779	3	3	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0034	3779	3	0	2	1	0	0	copy fasta	VSIR	chr10	71742556	71778520