JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSIR_chr10_71742556_71778520	0/0	t0135	3779	1	0	0	1	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0136	3779	1	1	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSIR_chr10_71742556_71778520	0/0	t0137	3779	1	1	0	0	0	0	copy fasta	VSIR	chr10	71742556	71778520
VSNL1_chr2_17535696_17662018	0/0	t0001	1849	40	3	8	26	0	3	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0002	1857	19	1	6	2	6	4	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0003	1857	13	6	5	1	1	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0004	1855	12	8	1	0	2	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0005	1853	11	8	3	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	1/0	t0006	1853	10	0	4	2	2	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0007	1852	9	6	3	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0008	1849	8	7	1	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0009	1855	8	0	2	4	1	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0010	1845	7	6	0	0	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0011	1848	7	1	4	0	0	2	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0012	1859	7	0	0	3	0	4	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/1	t0013	1861	7	0	5	0	1	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0014	1859	6	1	2	2	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0015	1851	5	0	2	1	1	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0016	1853	5	1	1	3	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0017	1857	5	5	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0018	1861	5	0	0	5	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0019	1847	4	1	1	1	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0020	1847	4	4	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0021	1850	4	3	1	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0022	1847	3	3	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0023	1851	3	3	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0024	1855	3	2	0	1	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0025	1857	3	2	0	1	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0026	1849	2	1	0	0	1	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0027	1851	2	0	1	0	1	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0028	1850	2	0	1	0	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0029	1860	2	2	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0030	1839	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0031	1841	1	0	0	0	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0032	1838	1	0	0	0	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0033	1846	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0034	1846	1	0	1	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0035	1853	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0036	1853	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0037	1855	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0038	1850	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0039	1857	1	0	0	0	0	1	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0040	1859	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0041	1864	1	0	1	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0042	1862	1	1	0	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0043	1864	1	0	1	0	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0044	1857	1	0	0	1	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSNL1_chr2_17535696_17662018	0/0	t0045	1853	1	0	0	1	0	0	copy fasta	VSNL1	chr2	17535696	17662018
VSTM1_chr19_54035825_54068897	0/0	t0001	257	233	61	25	123	7	17	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	t0002	257	111	16	15	56	7	17	copy fasta	VSTM1	chr19	54035825	54068897