JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSTM1_chr19_54035825_54068897	0/1	t0003	257	67	15	27	17	2	5	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	t0004	257	17	1	11	0	0	5	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	t0005	258	6	2	4	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	t0006	257	5	1	2	0	2	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM1_chr19_54035825_54068897	0/0	t0007	258	2	2	0	0	0	0	copy fasta	VSTM1	chr19	54035825	54068897
VSTM2A_chr7_54537375_54576067	1/0	t0001	2205	175	23	31	92	9	19	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/1	t0002	2205	102	27	23	38	3	10	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0003	2205	26	4	5	11	1	5	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0004	2205	14	2	1	8	0	3	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0005	2205	8	8	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0006	2205	7	0	6	0	0	1	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0007	2205	6	5	1	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0008	2205	4	4	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0009	2205	4	4	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0010	2205	3	3	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0011	2205	3	0	1	0	2	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0012	2205	3	0	3	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0013	2205	3	2	1	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0014	2205	3	0	0	0	2	1	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0015	2205	2	0	0	0	0	2	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0016	2205	2	1	1	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0017	2205	2	0	1	0	0	1	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0018	2205	2	2	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0019	2205	1	0	0	0	1	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0020	2205	1	0	0	0	0	1	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0021	2205	1	1	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0022	2205	1	0	0	0	0	1	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0023	2205	1	0	0	1	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0024	2205	1	0	0	1	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0025	2205	1	0	1	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0026	2205	1	1	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0027	2205	1	0	1	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0028	2205	1	0	0	1	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0029	2205	1	1	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0030	2205	1	1	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2A_chr7_54537375_54576067	0/0	t0031	2205	1	1	0	0	0	0	copy fasta	VSTM2A	chr7	54537375	54576067
VSTM2B_chr19_29520994_29569551	0/0	t0001	1208	369	90	73	159	8	39	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0002	1206	17	0	0	14	1	2	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0003	1208	6	6	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0004	1208	2	2	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0005	1208	2	2	0	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0006	1208	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0007	1208	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0008	1208	1	0	1	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0009	1206	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0010	1208	1	0	1	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0011	1208	1	0	0	0	0	1	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0012	1208	1	0	0	0	1	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0013	1208	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2B_chr19_29520994_29569551	0/0	t0014	1208	1	0	1	0	0	0	copy fasta	VSTM2B	chr19	29520994	29569551