JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSTM2B_chr19_29520994_29569551	0/0	t0015	1208	1	0	0	1	0	0	copy fasta	VSTM2B	chr19	29520994	29569551
VSTM2L_chr20_37898127_37950350	1/0	t0001	1322	196	47	34	89	5	20	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0002	1322	49	7	14	20	5	3	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0003	1322	31	13	8	3	0	7	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0004	1322	22	8	7	0	3	4	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0005	1322	10	0	1	9	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0006	1322	6	6	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0007	1322	6	0	3	0	0	3	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0008	1322	3	3	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0009	1322	3	3	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0010	1322	3	3	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0011	1322	3	0	0	1	2	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0012	1322	2	2	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0013	1322	2	0	0	0	0	2	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0014	1322	1	0	0	0	1	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0015	1322	1	0	0	1	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0016	1322	1	0	0	1	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/1	t0017	1322	1	0	0	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0018	1322	1	0	0	0	0	1	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0019	1322	1	0	1	0	0	0	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0020	1322	1	0	0	0	0	1	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM2L_chr20_37898127_37950350	0/0	t0021	1322	1	0	0	0	0	1	copy fasta	VSTM2L	chr20	37898127	37950350
VSTM4_chr10_49009236_49120522	0/0	t0001	5445	67	12	12	33	4	6	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0002	5440	37	3	10	16	1	7	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0003	5447	27	12	0	13	0	2	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	1/0	t0004	5452	18	15	2	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0005	5448	14	0	0	14	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0006	5444	12	4	2	1	1	4	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0007	5440	11	1	1	3	1	5	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/1	t0008	5444	10	0	5	0	2	2	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0009	5439	8	8	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0010	5440	6	0	0	6	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0011	5443	5	5	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0012	5445	4	0	2	2	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0013	5444	4	4	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0014	5446	4	0	0	3	0	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0015	5443	3	2	0	0	0	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0016	5444	3	0	3	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0017	5441	3	3	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0018	5448	3	1	2	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0019	5448	3	0	1	0	1	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0020	5446	2	2	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0021	5448	2	0	2	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0022	5440	2	0	0	2	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0023	5440	2	0	0	2	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0024	5443	2	0	2	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0025	5448	2	2	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0026	5444	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0027	5446	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0028	5447	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522