JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSTM4_chr10_49009236_49120522	0/0	t0029	5445	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0030	5445	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0031	5445	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0032	5445	1	0	0	0	0	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0033	5440	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0034	5445	1	0	0	0	0	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0035	5440	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0036	5440	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0037	5440	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0038	5444	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0039	5440	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0040	5440	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0041	5448	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0042	5446	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0043	5451	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0044	5452	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0045	5446	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0046	5447	1	1	0	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0047	5447	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0048	5443	1	0	1	0	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0049	5440	1	0	0	0	0	1	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0050	5448	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM4_chr10_49009236_49120522	0/0	t0051	5448	1	0	0	1	0	0	copy fasta	VSTM4	chr10	49009236	49120522
VSTM5_chr11_93813232_93855618	0/1	t0001	2455	101	22	24	28	5	21	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0002	2454	52	16	5	25	3	3	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0003	2456	50	1	9	35	1	4	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0004	2456	30	3	7	12	4	4	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0005	2457	21	2	5	13	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0006	2456	15	0	0	15	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0007	2454	8	0	2	5	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0008	2454	7	7	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0009	2455	7	0	1	6	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	1/0	t0010	2454	7	5	1	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0011	2454	7	7	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0012	2455	5	2	2	0	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0013	2457	5	3	2	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0014	2457	4	1	3	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0015	2454	4	4	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0016	2455	2	0	2	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0017	2455	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0018	2454	2	1	1	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0019	2457	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0020	2456	2	1	1	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0021	2456	2	2	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0022	2454	2	0	0	2	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0023	2455	1	0	0	1	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0024	2456	1	0	0	0	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0025	2457	1	0	0	1	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0026	2454	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0027	2454	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618