Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C15orf62_chr15_40764980_40777449	1/0	t0001	1943	172	33	36	77	9	16	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/1	t0002	1943	151	19	29	77	3	22	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0003	1924	24	5	6	6	2	5	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0004	1943	20	19	1	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0005	1943	6	0	0	6	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0006	1943	5	5	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0007	1943	4	4	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0008	1943	2	2	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0009	1943	2	2	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0010	1943	2	0	0	0	2	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0011	1943	1	1	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0012	1943	1	1	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0013	1943	1	0	0	0	0	1	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0014	1943	1	0	1	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0015	1924	1	0	0	1	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0016	1943	1	0	0	0	0	1	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0017	1943	1	1	0	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0018	1943	1	0	0	1	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0019	1943	1	0	0	1	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0020	1943	1	0	0	1	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0021	1943	1	0	0	0	0	1	copy fasta	C15orf62	chr15	40764980	40777449
C15orf62_chr15_40764980_40777449	0/0	t0022	1943	1	0	1	0	0	0	copy fasta	C15orf62	chr15	40764980	40777449
C16orf46_chr16_81055980_81082238	0/1	t0001	412	361	66	63	181	11	39	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	t0002	412	25	17	1	7	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	t0003	413	9	0	3	4	1	1	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	1/0	t0004	412	8	6	1	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	t0005	412	1	1	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	t0006	412	1	1	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf46_chr16_81055980_81082238	0/0	t0007	412	1	1	0	0	0	0	copy fasta	C16orf46	chr16	81055980	81082238
C16orf54_chr16_29737463_29750990	0/0	t0001	1897	166	35	27	70	8	26	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/1	t0002	1889	42	6	11	17	2	5	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0003	1898	33	6	11	12	1	3	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0004	1896	15	3	2	5	1	4	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0005	1897	8	7	1	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0006	1899	8	7	1	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0007	1897	6	6	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0008	1895	5	5	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0009	1898	5	5	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0010	1897	3	3	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0011	1895	3	3	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	1/0	t0012	1895	3	1	1	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0013	1895	2	0	1	1	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0014	1889	1	1	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0015	1895	1	1	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0016	1898	1	1	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0017	1897	1	0	0	1	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0018	1897	1	0	1	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0019	1885	1	1	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0020	1895	1	1	0	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990
C16orf54_chr16_29737463_29750990	0/0	t0021	1897	1	0	1	0	0	0	copy fasta	C16orf54	chr16	29737463	29750990