JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VSTM5_chr11_93813232_93855618	0/0	t0028	2457	1	0	0	1	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0029	2454	1	0	0	0	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0030	2456	1	0	0	1	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0031	2455	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0032	2456	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0033	2454	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0034	2456	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0035	2455	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0036	2456	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0037	2456	1	0	0	0	1	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0038	2457	1	0	0	0	0	1	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0039	2454	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0040	2455	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0041	2455	1	0	0	1	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0042	2456	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0043	2454	1	0	1	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0044	2457	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSTM5_chr11_93813232_93855618	0/0	t0045	2456	1	1	0	0	0	0	copy fasta	VSTM5	chr11	93813232	93855618
VSX1_chr20_25070463_25087141	1/1	t0001	844	316	65	59	132	14	44	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0002	843	28	27	1	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0003	844	8	0	7	0	0	1	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0004	843	7	7	0	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0005	844	4	0	3	0	0	1	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0006	844	3	0	0	3	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0007	844	1	0	0	1	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX1_chr20_25070463_25087141	0/0	t0008	843	1	1	0	0	0	0	copy fasta	VSX1	chr20	25070463	25087141
VSX2_chr14_74234449_74267738	1/1	t0001	1933	239	27	53	117	10	30	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0002	1933	68	20	8	28	0	12	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0003	1933	27	0	1	21	1	4	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0004	1931	16	0	0	16	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0005	1931	15	12	2	0	1	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0006	1933	10	9	1	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0007	1931	7	7	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0008	1933	7	0	5	0	2	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0009	1931	7	5	2	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0010	1933	4	0	0	4	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0011	1931	4	4	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0012	1933	3	3	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0013	1933	3	2	1	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0014	1931	2	2	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0015	1933	1	0	1	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0016	1933	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0017	1933	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0018	1933	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0019	1933	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0020	1933	1	1	0	0	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0021	1933	1	0	0	0	0	1	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0022	1933	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0023	1933	1	0	0	1	0	0	copy fasta	VSX2	chr14	74234449	74267738
VSX2_chr14_74234449_74267738	0/0	t0024	1933	1	0	0	0	0	1	copy fasta	VSX2	chr14	74234449	74267738