JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VTA1_chr6_142142263_142229685	0/0	t0001	6068	122	30	16	65	3	8	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/1	t0002	6201	56	6	10	28	3	8	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0003	6068	48	8	11	24	1	4	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0004	6068	19	2	6	2	2	7	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0005	6068	16	0	7	9	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0006	6068	5	5	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0007	6201	5	5	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0008	6068	4	3	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0009	6201	4	4	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0010	6201	4	0	0	4	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0011	6068	3	3	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0012	6201	3	0	2	0	1	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0013	6196	3	2	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0014	6068	3	3	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0015	6068	2	2	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	1/0	t0016	6068	2	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0017	6068	2	2	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0018	6068	2	0	2	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0019	6181	2	2	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0020	6201	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0021	6201	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0022	6201	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0023	6202	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0024	6068	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0025	6068	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0026	6068	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0027	6068	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0028	6068	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0029	6068	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0030	6068	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0031	6068	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0032	6201	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0033	6068	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0034	6068	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0035	6068	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0036	6068	1	0	0	0	0	1	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0037	6068	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0038	6201	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0039	6201	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0040	6201	1	0	1	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0041	6201	1	0	0	0	0	1	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0042	6201	1	0	0	0	0	1	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0043	6201	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0044	6201	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0045	6068	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0046	6068	1	0	0	1	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0047	6181	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTA1_chr6_142142263_142229685	0/0	t0048	6181	1	1	0	0	0	0	copy fasta	VTA1	chr6	142142263	142229685
VTCN1_chr1_117138587_117215927	0/0	t0001	1757	106	22	25	30	7	22	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	1/0	t0002	1757	42	11	7	16	2	5	copy fasta	VTCN1	chr1	117138587	117215927