JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VTCN1_chr1_117138587_117215927	0/0	t0003	1757	36	33	2	0	0	1	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/1	t0004	1757	20	0	8	2	2	7	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0005	1755	12	12	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0006	1757	11	0	0	9	1	1	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0007	1757	7	7	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0008	1757	3	3	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0009	1757	3	0	0	3	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0010	1755	2	2	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0011	1757	1	1	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0012	1757	1	1	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0013	1757	1	1	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0014	1757	1	0	1	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0015	1755	1	1	0	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTCN1_chr1_117138587_117215927	0/0	t0016	1757	1	0	1	0	0	0	copy fasta	VTCN1	chr1	117138587	117215927
VTI1A_chr10_112442215_112823744	1/1	t0001	3521	81	39	8	21	5	6	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0002	3521	41	4	3	29	0	5	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0003	3521	13	0	3	7	1	2	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0004	3521	11	5	0	6	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0005	3521	3	3	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0006	3522	3	3	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0007	3521	3	3	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0008	3521	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0009	3521	1	0	0	0	0	1	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0010	3521	1	0	1	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0011	3521	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0012	3521	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0013	3521	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0014	3521	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0015	3521	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0016	3521	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0017	3522	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0018	3521	1	1	0	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0019	3521	1	0	1	0	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1A_chr10_112442215_112823744	0/0	t0020	3521	1	0	0	1	0	0	copy fasta	VTI1A	chr10	112442215	112823744
VTI1B_chr14_67642085_67679632	0/0	t0001	4444	98	13	11	54	2	18	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	1/1	t0002	4444	82	22	9	37	5	7	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0003	4444	78	8	13	51	2	4	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0004	4441	78	14	13	45	2	4	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0005	4444	36	1	24	4	4	3	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0006	4444	20	4	12	0	1	3	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0007	4436	18	18	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0008	4444	9	8	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0009	4444	7	7	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0010	4444	3	0	0	0	2	1	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0011	4444	2	0	0	2	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0012	4444	2	0	0	2	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0013	4444	1	0	0	0	0	1	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0014	4444	1	1	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0015	4444	1	1	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0016	4444	1	0	0	0	0	1	copy fasta	VTI1B	chr14	67642085	67679632