JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VTI1B_chr14_67642085_67679632	0/0	t0017	4444	1	0	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0018	4444	1	0	0	1	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0019	4444	1	0	0	1	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0020	4444	1	0	0	1	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0021	4444	1	0	0	1	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0022	4441	1	0	0	1	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0023	4436	1	1	0	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0024	4444	1	0	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTI1B_chr14_67642085_67679632	0/0	t0025	4444	1	0	1	0	0	0	copy fasta	VTI1B	chr14	67642085	67679632
VTN_chr17_28362284_28375307	1/1	t0001	190	388	92	82	152	14	46	copy fasta	VTN	chr17	28362284	28375307
VTN_chr17_28362284_28375307	0/0	t0002	190	2	2	0	0	0	0	copy fasta	VTN	chr17	28362284	28375307
VWA1_chr1_1430690_1447882	0/0	t0001	3187	119	16	16	69	2	16	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/1	t0002	3187	39	6	15	0	5	12	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0003	3187	33	9	1	18	1	4	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0004	3187	13	8	3	0	1	1	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0005	3187	9	9	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0006	3187	7	3	4	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0007	3187	6	0	0	6	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0008	3155	4	4	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0009	3187	3	3	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0010	3187	3	3	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0011	3187	3	1	2	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0012	3187	3	3	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0013	3187	3	0	0	3	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0014	3187	2	0	1	0	1	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0015	3187	2	2	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0016	3187	2	2	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0017	3187	2	0	0	2	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0018	3187	1	0	0	1	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0019	3187	1	0	0	1	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0020	3187	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0021	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0022	3155	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0023	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0024	3187	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0025	3187	1	0	0	1	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0026	3155	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0027	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0028	3187	1	0	0	0	0	1	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0029	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	1/0	t0030	3155	1	0	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0031	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0032	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0033	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0034	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0035	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0036	3187	1	0	0	1	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0037	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0038	3187	1	0	0	1	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0039	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882