JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWA1_chr1_1430690_1447882	0/0	t0040	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0041	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0042	3187	1	1	0	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0043	3187	1	0	0	1	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA1_chr1_1430690_1447882	0/0	t0044	3187	1	0	1	0	0	0	copy fasta	VWA1	chr1	1430690	1447882
VWA2_chr10_114234254_114299489	0/0	t0001	3579	66	7	16	32	1	10	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/1	t0002	3579	33	5	14	6	3	4	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0003	3579	23	2	4	13	0	4	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0004	3579	23	17	4	0	1	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0005	3579	9	9	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0006	3579	8	1	7	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0007	3579	7	7	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0008	3579	6	0	1	5	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0009	3579	6	1	2	1	0	2	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0010	3579	6	2	2	0	2	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0011	3579	5	0	2	0	0	3	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0012	3579	4	2	1	0	1	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0013	3579	4	3	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0014	3579	4	4	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0015	3579	4	2	1	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0016	3579	3	0	2	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0017	3579	3	2	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0018	3579	3	2	0	0	1	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0019	3579	2	0	1	1	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0020	3579	2	2	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0021	3579	2	1	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0022	3579	2	2	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0023	3579	2	2	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0024	3579	2	2	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0025	3579	2	1	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0026	3579	1	0	0	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0027	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0028	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0029	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0030	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	1/0	t0031	3579	1	0	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0032	3579	1	0	0	0	0	1	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0033	3579	1	0	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0034	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0035	3579	1	0	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0036	3579	1	0	1	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0037	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0038	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0039	3579	1	0	0	0	1	0	copy fasta	VWA2	chr10	114234254	114299489
VWA2_chr10_114234254_114299489	0/0	t0040	3579	1	1	0	0	0	0	copy fasta	VWA2	chr10	114234254	114299489
VWA3A_chr16_22087541_22161964	1/1	t0001	1045	283	66	44	129	6	36	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	t0002	1045	3	3	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	t0003	1045	2	0	0	0	0	2	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	t0004	1045	2	0	0	2	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	t0005	1045	2	2	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964