JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWA3A_chr16_22087541_22161964	0/0	t0006	1045	1	0	0	1	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3A_chr16_22087541_22161964	0/0	t0007	1045	1	1	0	0	0	0	copy fasta	VWA3A	chr16	22087541	22161964
VWA3B_chr2_98082167_98318299	1/1	t0001	1180	79	6	19	39	4	9	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0002	1180	50	0	15	28	5	2	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0003	1180	43	17	8	13	3	2	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0004	1180	29	12	9	3	4	1	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0005	1180	7	7	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0006	1180	4	0	0	4	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0007	1180	3	0	0	3	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0008	1180	3	0	0	3	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0009	1181	3	3	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0010	1180	2	2	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0011	1182	2	2	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0012	1180	2	2	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0013	1180	2	2	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0014	1180	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0015	1180	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0016	1181	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0017	1181	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0018	1180	1	0	0	1	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0019	1145	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0020	1182	1	0	1	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0021	1180	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0022	1180	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0023	1180	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA3B_chr2_98082167_98318299	0/0	t0024	1180	1	1	0	0	0	0	copy fasta	VWA3B	chr2	98082167	98318299
VWA5A_chr11_124110450_124152721	0/0	t0001	1940	89	0	16	64	6	3	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	1/0	t0002	1940	73	1	21	34	3	13	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0003	1940	38	7	8	22	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0004	1940	30	7	0	19	0	4	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0005	1940	30	7	5	8	3	7	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0006	1940	27	12	2	13	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0007	1940	17	4	2	5	2	4	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0008	1940	15	9	5	0	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0009	1940	13	0	5	7	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0010	1940	8	5	2	0	1	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0011	1940	7	7	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0012	1940	6	0	1	5	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/1	t0013	1940	5	0	2	2	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0014	1940	5	0	0	3	2	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0015	1940	4	3	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0016	1940	3	2	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0017	1940	3	3	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0018	1940	3	0	0	0	0	3	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0019	1940	3	0	0	3	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0020	1940	3	2	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0021	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0022	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0023	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0024	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721