JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWA5A_chr11_124110450_124152721	0/0	t0025	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0026	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0027	1940	2	0	0	0	0	2	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0028	1940	2	0	0	2	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0029	1940	2	0	0	2	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0030	1940	2	0	0	1	0	1	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0031	1940	2	0	0	2	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0032	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0033	1940	2	2	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0034	1940	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0035	1940	1	0	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0036	1940	1	0	1	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0037	1940	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0038	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0039	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0040	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0041	1940	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0042	1940	1	0	0	1	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0043	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0044	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0045	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0046	1940	1	0	0	0	1	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0047	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0048	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5A_chr11_124110450_124152721	0/0	t0049	1940	1	1	0	0	0	0	copy fasta	VWA5A	chr11	124110450	124152721
VWA5B1_chr1_20285875_20364518	0/0	t0001	5497	54	1	8	36	4	5	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0002	5496	45	0	8	32	2	3	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/1	t0003	5496	43	7	19	8	1	7	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0004	5496	33	21	5	0	1	6	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0005	5496	21	0	0	21	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0006	5496	10	0	2	8	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0007	5497	10	8	2	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0008	5496	8	0	7	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0009	5496	7	0	5	2	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0010	5496	6	5	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0011	5497	6	0	1	2	0	3	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0012	5496	6	5	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0013	5497	4	2	0	0	0	2	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0014	5496	4	0	1	0	2	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0015	5496	4	4	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0016	5496	4	4	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0017	5496	3	3	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0018	5496	3	3	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0019	5496	3	1	0	0	0	2	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0020	5496	2	0	0	0	1	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0021	5497	2	0	2	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0022	5497	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0023	5497	2	0	2	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0024	5081	2	0	0	2	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0025	5497	2	0	1	0	1	0	copy fasta	VWA5B1	chr1	20285875	20364518