JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWA5B1_chr1_20285875_20364518	1/0	t0026	5496	2	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0027	5496	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0028	5496	2	1	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0029	5496	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0030	5496	2	2	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0031	5496	2	0	0	1	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0032	5497	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0033	5497	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0034	5497	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0035	5497	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0036	5496	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0037	5496	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0038	5496	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0039	5496	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0040	5496	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0041	5496	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0042	5496	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0043	5496	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0044	5497	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0045	5497	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0046	5497	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0047	5496	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0048	5496	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0049	5496	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0050	5497	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0051	5497	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0052	5497	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0053	5496	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0054	5496	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0055	5496	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0056	5496	1	0	0	0	0	1	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0057	5496	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0058	5496	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0059	5496	1	1	0	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0060	5496	1	0	0	1	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B1_chr1_20285875_20364518	0/0	t0061	5496	1	0	1	0	0	0	copy fasta	VWA5B1	chr1	20285875	20364518
VWA5B2_chr3_184224585_184247329	1/0	t0001	570	176	38	37	76	8	16	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/1	t0002	570	98	21	16	42	5	13	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	t0003	570	53	28	5	20	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	t0004	570	12	2	6	0	3	1	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	t0005	570	2	0	0	2	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA5B2_chr3_184224585_184247329	0/0	t0006	570	1	1	0	0	0	0	copy fasta	VWA5B2	chr3	184224585	184247329
VWA7_chr6_31760590_31782328	0/1	t0001	240	405	89	80	176	17	42	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	t0002	239	7	3	0	2	1	1	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	t0003	240	4	0	0	1	0	3	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	t0004	240	4	1	0	3	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	t0005	240	2	0	0	2	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA7_chr6_31760590_31782328	0/0	t0006	240	1	1	0	0	0	0	copy fasta	VWA7	chr6	31760590	31782328
VWA8_chr13_41561835_41966109	0/1	t0001	1457	206	27	44	95	10	29	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0002	1457	23	21	2	0	0	0	copy fasta	VWA8	chr13	41561835	41966109