JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWA8_chr13_41561835_41966109	1/0	t0003	1457	5	4	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0004	1457	5	0	0	5	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0005	1454	2	2	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0006	1457	2	0	0	0	0	2	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0007	1457	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0008	1457	1	0	0	0	0	1	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0009	1457	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0010	1457	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0011	1457	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0012	1457	1	0	0	1	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWA8_chr13_41561835_41966109	0/0	t0013	1457	1	1	0	0	0	0	copy fasta	VWA8	chr13	41561835	41966109
VWC2L_chr2_214406054_214583976	1/1	t0001	3970	144	21	32	71	5	13	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0002	3965	74	18	20	30	2	4	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0003	3965	16	16	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0004	3965	6	5	1	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0005	3970	5	0	1	1	0	3	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0006	3970	5	5	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0007	3967	5	4	1	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0008	3965	2	0	0	2	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0009	3965	2	0	2	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0010	3970	2	2	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0011	3965	2	2	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0012	3970	1	0	1	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0013	3970	1	0	0	1	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0014	3965	1	0	1	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0015	3965	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0016	3970	1	0	0	1	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0017	3970	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0018	3970	1	0	0	1	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0019	3970	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0020	3970	1	0	0	0	0	1	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0021	3970	1	0	0	0	1	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0022	3970	1	0	0	1	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0023	3970	1	0	1	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0024	3970	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0025	3965	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0026	3970	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0027	3970	1	0	0	0	0	1	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0028	3970	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0029	3965	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2L_chr2_214406054_214583976	0/0	t0030	3970	1	1	0	0	0	0	copy fasta	VWC2L	chr2	214406054	214583976
VWC2_chr7_49768638_49926950	0/0	t0001	10349	44	12	10	12	1	9	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0002	10349	39	0	10	18	6	5	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0003	10350	23	8	6	6	0	3	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0004	10345	17	1	2	8	1	5	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0005	10341	12	1	8	1	0	2	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0006	10349	9	4	1	2	0	2	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/1	t0007	10346	8	0	2	0	0	5	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0008	10341	6	6	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0009	10349	6	0	2	0	1	3	copy fasta	VWC2	chr7	49768638	49926950