JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
VWC2_chr7_49768638_49926950	0/0	t0010	10343	6	0	4	0	2	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0011	10350	5	4	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0012	10345	4	3	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0013	10347	4	3	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0014	10351	4	3	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0015	10349	3	3	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0016	10349	2	1	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0017	10349	2	2	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0018	10341	2	0	0	1	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0019	10349	2	0	0	0	1	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0020	10349	2	0	0	2	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0021	10349	2	0	0	2	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0022	10346	2	2	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0023	10349	2	2	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0024	10345	2	0	0	2	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0025	10345	2	1	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0026	10346	2	2	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0027	10345	2	0	2	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0028	10341	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0029	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0030	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0031	10345	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0032	10346	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0033	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0034	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0035	10341	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0036	10350	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0037	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0038	10346	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0039	10349	1	0	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0040	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0041	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0042	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0043	10350	1	0	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0044	10349	1	0	0	1	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0045	10349	1	0	1	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0046	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0047	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0048	10350	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0049	10346	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0050	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0051	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0052	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0053	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0054	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0055	10349	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0056	10351	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0057	10350	1	1	0	0	0	0	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0058	10350	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950
VWC2_chr7_49768638_49926950	0/0	t0059	10350	1	0	0	0	0	1	copy fasta	VWC2	chr7	49768638	49926950