JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WAC_chr10_28528118_28628112	0/0	t0003	3967	10	1	0	6	0	3	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0004	3968	10	0	3	6	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0005	3969	9	3	5	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0006	3964	9	2	4	2	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/1	t0007	3969	8	1	0	6	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0008	3966	8	0	2	4	1	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0009	3966	7	2	2	3	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0010	3968	7	0	0	6	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0011	3968	7	0	3	2	0	2	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0012	3967	6	3	0	0	2	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0013	3962	6	6	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0014	3971	5	2	1	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0015	3967	5	0	2	3	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0016	3969	4	0	0	4	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0017	3967	4	0	3	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0018	3972	4	0	3	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0019	3970	4	0	2	0	0	2	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0020	3969	4	1	0	2	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0021	3965	4	2	2	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0022	3963	4	3	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0023	3963	3	3	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0024	3972	3	0	1	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0025	3967	3	1	0	0	0	2	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0026	3968	3	3	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0027	3966	3	3	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0028	3966	3	2	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0029	3966	2	0	2	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0030	3970	2	0	0	1	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0031	3963	2	1	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0032	3966	2	0	0	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0033	3968	2	1	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0034	3966	2	0	2	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0035	3960	2	2	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0036	3970	2	0	0	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0037	3971	2	0	1	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0038	3969	2	0	1	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0039	3970	2	2	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0040	3970	2	2	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0041	3967	2	1	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0042	3964	2	2	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0043	3970	2	0	0	1	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0044	3967	2	0	0	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0045	3965	2	0	0	1	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0046	3971	2	0	0	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0047	3970	2	0	1	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0048	3967	2	0	1	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0049	3965	2	0	0	1	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0050	3964	2	0	0	2	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	1/0	t0051	3969	1	0	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0052	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112