JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WAC_chr10_28528118_28628112	0/0	t0053	3970	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0054	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0055	3971	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0056	3960	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0057	3968	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0058	3967	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0059	3967	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0060	3972	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0061	3972	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0062	3972	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0063	3971	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0064	3970	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0065	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0066	3963	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0067	3968	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0068	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0069	3954	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0070	3968	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0071	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0072	3965	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0073	3967	1	0	0	0	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0074	3964	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0075	3966	1	0	0	0	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0076	3963	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0077	3962	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0078	3955	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0079	3955	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0080	3967	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0081	3963	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0082	3972	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0083	3971	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0084	3969	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0085	3968	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0086	3965	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0087	3964	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0088	3971	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0089	3969	1	0	0	0	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0090	3964	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0091	3973	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0092	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0093	3967	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0094	3966	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0095	3965	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0096	3959	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0097	3966	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0098	3964	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0099	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0100	3966	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0101	3971	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0102	3967	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112