JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WAC_chr10_28528118_28628112	0/0	t0103	3965	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0104	3965	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0105	3973	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0106	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0107	3969	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0108	3968	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0109	3962	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0110	3967	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0111	3970	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0112	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0113	3963	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0114	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0115	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0116	3964	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0117	3971	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0118	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0119	3968	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0120	3963	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0121	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0122	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0123	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0124	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0125	3965	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0126	3969	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0127	3966	1	0	0	0	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0128	3969	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0129	3961	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0130	3968	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0131	3966	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0132	3967	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0133	3968	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0134	3968	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0135	3978	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0136	3966	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0137	3966	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0138	3965	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0139	3976	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0140	3971	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0141	3969	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0142	3967	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0143	3969	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0144	3967	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0145	3966	1	0	0	0	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0146	3965	1	0	0	0	1	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0147	3964	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0148	3964	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0149	3971	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0150	3970	1	0	1	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0151	3966	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0152	3964	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112