JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WAC_chr10_28528118_28628112	0/0	t0153	3963	1	1	0	0	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0154	3966	1	0	0	1	0	0	copy fasta	WAC	chr10	28528118	28628112
WAC_chr10_28528118_28628112	0/0	t0155	3968	1	0	0	0	0	1	copy fasta	WAC	chr10	28528118	28628112
WAPL_chr10_86430256_86526792	0/1	t0001	2741	297	78	43	146	10	19	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0002	2741	77	3	13	38	5	18	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0003	2738	16	0	13	0	1	2	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0004	2739	5	0	0	5	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0005	2739	2	0	0	2	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0006	2741	2	0	2	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0007	2741	2	2	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0008	2741	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0009	2741	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0010	2741	1	0	0	0	0	1	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0011	2741	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0012	2741	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0013	2741	1	1	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0014	2741	1	0	1	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	0/0	t0015	2741	1	0	0	1	0	0	copy fasta	WAPL	chr10	86430256	86526792
WAPL_chr10_86430256_86526792	1/0	t0016	2738	1	0	0	0	0	0	copy fasta	WAPL	chr10	86430256	86526792
WARS1_chr14_100328790_100380347	1/1	t0001	1224	303	97	46	115	13	30	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	t0002	1224	33	0	0	32	1	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	t0003	1224	1	1	0	0	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS1_chr14_100328790_100380347	0/0	t0004	1224	1	0	0	1	0	0	copy fasta	WARS1	chr14	100328790	100380347
WARS2_chr1_119026216_119145653	0/0	t0001	1705	86	3	19	60	2	2	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/1	t0002	1705	62	13	4	42	1	1	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	1/0	t0003	1705	59	8	12	25	2	11	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0004	1705	41	23	1	12	0	5	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0005	1705	30	10	8	12	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0006	1705	27	7	10	4	1	5	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0007	1705	23	2	6	6	2	7	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0008	1705	10	10	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0009	1705	5	5	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0010	1705	4	4	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0011	1705	2	2	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0012	1705	1	1	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0013	1705	1	0	0	1	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0014	1705	1	0	0	0	0	1	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0015	1705	1	1	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WARS2_chr1_119026216_119145653	0/0	t0016	1705	1	1	0	0	0	0	copy fasta	WARS2	chr1	119026216	119145653
WASF1_chr6_110094819_110184670	0/1	t0001	1207	99	18	24	39	3	14	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0002	1207	64	19	16	25	1	3	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	1/0	t0003	1207	45	20	6	15	1	2	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0004	1207	32	7	0	20	2	3	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0005	1206	8	8	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0006	1207	6	6	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0007	1207	2	2	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0008	1207	2	0	0	0	0	2	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0009	1207	1	0	0	1	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0010	1207	1	0	0	0	1	0	copy fasta	WASF1	chr6	110094819	110184670
WASF1_chr6_110094819_110184670	0/0	t0011	1207	1	1	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670