JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WASF1_chr6_110094819_110184670	0/0	t0012	1207	1	1	0	0	0	0	copy fasta	WASF1	chr6	110094819	110184670
WASF2_chr1_27399230_27495167	0/0	t0001	4175	59	12	16	21	4	6	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0002	4176	25	3	4	14	0	4	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	1/0	t0003	4185	21	11	3	6	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/1	t0004	4175	21	8	4	0	3	5	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0005	4191	18	2	0	15	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0006	4192	17	1	0	11	0	5	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0007	4181	11	8	3	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0008	4176	7	0	7	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0009	4176	6	0	1	4	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0010	4187	5	2	1	1	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0011	4180	5	3	1	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0012	4180	4	4	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0013	4182	4	4	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0014	4181	3	3	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0015	4177	3	0	0	3	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0016	4177	3	0	0	3	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0017	4176	3	0	0	3	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0018	4181	2	2	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0019	4200	2	1	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0020	4199	2	0	0	2	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0021	4174	2	1	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0022	4171	2	2	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0023	4171	2	2	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0024	4192	2	2	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0025	4175	1	0	0	0	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0026	4182	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0027	4180	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0028	4182	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0029	4181	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0030	4182	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0031	4187	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0032	4187	1	0	1	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0033	4185	1	0	0	0	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0034	4185	1	0	0	0	1	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0035	4182	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0036	4182	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0037	4205	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0038	4202	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0039	4197	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0040	4196	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0041	4195	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0042	4192	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0043	4176	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0044	4176	1	0	0	0	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0045	4176	1	0	1	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0046	4163	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0047	4172	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0048	4185	1	0	0	0	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0049	4182	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167