JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WASF2_chr1_27399230_27495167	0/0	t0050	4176	1	0	0	0	0	1	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0051	4185	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0052	4192	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0053	4175	1	0	0	1	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0054	4203	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF2_chr1_27399230_27495167	0/0	t0055	4173	1	1	0	0	0	0	copy fasta	WASF2	chr1	27399230	27495167
WASF3_chr13_26552683_26693948	0/0	t0001	3352	87	11	17	49	2	8	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/1	t0002	3350	71	8	9	40	4	9	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0003	3326	19	5	5	7	0	2	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0004	3328	17	2	7	3	3	2	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0005	3350	16	0	11	2	0	3	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0006	3326	13	10	2	0	0	1	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0007	3351	8	8	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	1/0	t0008	3349	7	6	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0009	3352	7	7	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0010	3351	6	1	0	3	0	2	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0011	3326	5	5	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0012	3352	4	0	4	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0013	3349	3	3	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0014	3334	2	0	0	2	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0015	3353	2	1	1	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0016	3326	2	1	1	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0017	3326	2	0	1	0	1	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0018	3327	2	1	1	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0019	3326	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0020	3349	1	0	1	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0021	3352	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0022	3352	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0023	3351	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0024	3345	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0025	3353	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0026	3349	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0027	3327	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0028	3327	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0029	3352	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0030	3327	1	0	0	0	0	1	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0031	3351	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0032	3352	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0033	3348	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0034	3349	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0035	3349	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0036	3349	1	1	0	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0037	3352	1	0	1	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0038	3350	1	0	1	0	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASF3_chr13_26552683_26693948	0/0	t0039	3349	1	0	0	1	0	0	copy fasta	WASF3	chr13	26552683	26693948
WASHC2A_chr10_50062954_50138509	1/1	t0001	617	132	53	27	40	5	5	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0002	617	93	6	13	62	2	10	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0003	617	52	3	21	16	1	11	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0004	617	17	0	2	15	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0005	617	11	4	0	7	0	0	copy fasta	WASHC2A	chr10	50062954	50138509