JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WASHC2A_chr10_50062954_50138509	0/0	t0006	617	2	1	1	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0007	617	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0008	617	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2A_chr10_50062954_50138509	0/0	t0009	617	1	1	0	0	0	0	copy fasta	WASHC2A	chr10	50062954	50138509
WASHC2C_chr10_45722266_45797964	1/0	t0001	617	255	64	44	111	9	26	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/1	t0002	617	48	7	18	17	1	4	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0003	618	24	1	1	17	3	2	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0004	617	16	4	3	1	1	7	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0005	617	14	0	3	11	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0006	618	7	6	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0007	618	4	0	0	4	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0008	617	3	0	0	3	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0009	617	3	0	1	1	1	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0010	617	1	0	1	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0011	617	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0012	617	1	0	0	1	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0013	617	1	1	0	0	0	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0014	617	1	0	0	0	1	0	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC2C_chr10_45722266_45797964	0/0	t0015	617	1	0	0	0	0	1	copy fasta	WASHC2C	chr10	45722266	45797964
WASHC3_chr12_102007840_102066991	1/1	t0001	298	356	94	58	164	10	28	copy fasta	WASHC3	chr12	102007840	102066991
WASHC4_chr12_105102731_105174130	0/1	t0001	2270	118	24	21	51	5	16	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0002	2270	78	3	19	46	2	8	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0003	2270	78	9	14	46	0	9	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0004	2268	36	22	8	0	1	5	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	1/0	t0005	2270	23	10	4	4	4	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0006	2272	19	0	0	19	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0007	2270	16	0	6	10	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0008	2270	12	11	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0009	2270	5	5	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0010	2270	3	1	2	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0011	2270	2	0	0	2	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0012	2272	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0013	2270	1	0	0	1	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0014	2270	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0015	2270	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0016	2270	1	0	1	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC4_chr12_105102731_105174130	0/0	t0017	2270	1	1	0	0	0	0	copy fasta	WASHC4	chr12	105102731	105174130
WASHC5_chr8_125019260_125096792	1/1	t0001	660	342	84	60	151	14	31	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	t0002	658	3	3	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	t0003	660	2	0	0	2	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	t0004	660	2	0	2	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	t0005	660	1	0	0	0	0	1	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	t0006	660	1	1	0	0	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASHC5_chr8_125019260_125096792	0/0	t0007	660	1	0	0	1	0	0	copy fasta	WASHC5	chr8	125019260	125096792
WASL_chr7_123676943_123754003	0/0	t0001	2844	145	29	23	63	6	24	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	1/0	t0002	2846	89	32	13	32	3	8	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/1	t0003	2846	59	15	12	28	1	2	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0004	2846	33	3	4	19	3	4	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0005	2846	4	0	0	4	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0006	2844	3	3	0	0	0	0	copy fasta	WASL	chr7	123676943	123754003