JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WASL_chr7_123676943_123754003	0/0	t0007	2846	2	0	0	2	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0008	2846	2	0	0	2	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0009	2846	2	2	0	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0010	2844	2	2	0	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0011	2846	2	0	2	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0012	2846	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0013	2846	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0014	2846	1	1	0	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0015	2846	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0016	2846	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0017	2844	1	1	0	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0018	2844	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0019	2844	1	0	0	1	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0020	2844	1	0	0	1	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0021	2844	1	0	0	0	1	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0022	2844	1	0	1	0	0	0	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0023	2844	1	0	0	0	0	1	copy fasta	WASL	chr7	123676943	123754003
WASL_chr7_123676943_123754003	0/0	t0024	2844	1	0	0	0	0	1	copy fasta	WASL	chr7	123676943	123754003
WAS_chrX_48678799_48696427	1/1	t0001	321	273	74	51	109	11	26	copy fasta	WAS	chrX	48678799	48696427
WAS_chrX_48678799_48696427	0/0	t0002	321	1	0	1	0	0	0	copy fasta	WAS	chrX	48678799	48696427
WBP11_chr12_14779582_14808478	1/0	t0001	2656	135	21	24	64	8	17	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0002	2664	67	17	21	17	3	9	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0003	2664	47	20	7	16	1	3	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/1	t0004	2664	47	3	8	27	2	6	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0005	2661	29	2	15	6	2	4	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0006	2664	11	0	0	11	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0007	2664	7	0	0	7	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0008	2656	5	2	0	2	0	1	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0009	2664	5	5	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0010	2664	4	4	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0011	2661	4	3	0	0	0	1	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0012	2664	3	0	0	0	0	3	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0013	2664	3	1	0	2	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0014	2661	2	0	2	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0015	2664	2	0	0	2	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0016	2656	2	2	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0017	2664	1	0	0	0	0	1	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0018	2664	1	1	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0019	2664	1	1	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0020	2664	1	1	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0021	2664	1	0	1	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0022	2664	1	0	1	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0023	2664	1	0	0	1	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0024	2656	1	0	0	1	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0025	2656	1	0	0	1	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0026	2664	1	0	0	0	0	1	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0027	2656	1	0	0	1	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0028	2664	1	1	0	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP11_chr12_14779582_14808478	0/0	t0029	2664	1	0	1	0	0	0	copy fasta	WBP11	chr12	14779582	14808478
WBP1L_chr10_102738948_102821262	0/0	t0001	3037	103	25	22	36	5	15	copy fasta	WBP1L	chr10	102738948	102821262