JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WBP1L_chr10_102738948_102821262	1/0	t0002	3038	89	21	9	46	3	9	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/1	t0003	3037	56	1	8	37	1	8	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0004	3039	42	8	18	15	1	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0005	3038	11	1	6	3	0	1	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0006	3038	10	0	0	10	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0007	3037	9	6	2	0	0	1	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0008	3037	6	5	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0009	3040	3	0	1	1	1	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0010	3037	2	0	1	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0011	3037	2	2	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0012	3040	2	2	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0013	3045	2	0	2	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0014	3037	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0015	3039	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0016	3038	1	0	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0017	3037	1	0	0	0	0	1	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0018	3037	1	0	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0019	3037	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0020	3038	1	0	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0021	3040	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0022	3038	1	0	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0023	3038	1	0	0	0	1	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0024	3038	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0025	3038	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0026	3037	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0027	3038	1	0	0	0	0	1	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0028	3038	1	0	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0029	3039	1	0	1	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0030	3039	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0031	3039	1	0	0	1	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0032	3040	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0033	3037	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0034	3039	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0035	3038	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1L_chr10_102738948_102821262	0/0	t0036	3044	1	1	0	0	0	0	copy fasta	WBP1L	chr10	102738948	102821262
WBP1_chr2_74453438_74465881	1/1	t0001	366	341	91	75	123	16	34	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	t0002	366	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	t0003	366	1	1	0	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	t0004	366	1	0	1	0	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	t0005	366	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP1_chr2_74453438_74465881	0/0	t0006	366	1	0	0	1	0	0	copy fasta	WBP1	chr2	74453438	74465881
WBP2NL_chr22_41993788_42033475	0/0	t0001	1326	191	6	33	128	4	20	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	1/1	t0002	1326	162	62	35	33	13	17	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0003	1326	19	18	1	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0004	1326	6	4	2	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0005	1326	3	0	1	0	1	1	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0006	1326	2	2	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0007	1326	1	0	0	0	0	1	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0008	1326	1	1	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0009	1326	1	0	0	0	0	1	copy fasta	WBP2NL	chr22	41993788	42033475