Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
C16orf87_chr16_46791603_46836180	0/0	t0006	6382	6	1	4	0	0	1	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0007	6381	5	0	0	5	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0008	6380	4	4	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0009	6377	3	0	0	0	0	3	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0010	6381	3	3	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0011	6381	3	3	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0012	6385	2	2	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0013	6385	2	2	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0014	6380	2	0	1	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0015	6381	2	0	2	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0016	6378	2	2	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0017	6381	2	0	0	0	0	2	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0018	6381	2	0	0	0	2	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0019	6381	2	0	0	0	0	2	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0020	6381	1	0	1	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0021	6381	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0022	6381	1	1	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0023	6381	1	1	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0024	6381	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0025	6381	1	0	1	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0026	6380	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0027	6382	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0028	6381	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0029	6381	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0030	6381	1	1	0	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0031	6381	1	0	1	0	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0032	6382	1	0	0	1	0	0	copy fasta	C16orf87	chr16	46791603	46836180
C16orf87_chr16_46791603_46836180	0/0	t0033	6381	1	0	0	0	0	1	copy fasta	C16orf87	chr16	46791603	46836180
C16orf89_chr16_5039122_5070956	0/1	t0001	275	421	88	77	192	18	45	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	t0002	275	6	6	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	1/0	t0003	275	2	1	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	t0004	275	1	0	0	0	0	1	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	t0005	275	1	0	1	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf89_chr16_5039122_5070956	0/0	t0006	275	1	1	0	0	0	0	copy fasta	C16orf89	chr16	5039122	5070956
C16orf90_chr16_3488484_3500489	1/1	t0001	424	374	65	66	186	14	41	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0002	424	20	6	3	9	0	2	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0003	424	12	0	0	12	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0004	424	11	11	0	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0005	424	5	3	2	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0006	424	5	0	5	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0007	424	4	4	0	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0008	424	3	2	0	0	0	1	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0009	424	2	2	0	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0010	424	2	2	0	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0011	424	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0012	424	1	0	0	0	0	1	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0013	424	1	1	0	0	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0014	424	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0015	424	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489
C16orf90_chr16_3488484_3500489	0/0	t0016	424	1	0	0	1	0	0	copy fasta	C16orf90	chr16	3488484	3500489