JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WBP2NL_chr22_41993788_42033475	0/0	t0010	1326	1	1	0	0	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2NL_chr22_41993788_42033475	0/0	t0011	1326	1	0	0	1	0	0	copy fasta	WBP2NL	chr22	41993788	42033475
WBP2_chr17_75840699_75860335	1/1	t0001	1074	364	81	68	158	18	37	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	t0002	1074	11	8	1	0	0	2	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	t0003	1074	4	1	2	0	0	1	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	t0004	1074	2	1	1	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	t0005	1074	1	1	0	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	t0006	1074	1	1	0	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP2_chr17_75840699_75860335	0/0	t0007	1074	1	1	0	0	0	0	copy fasta	WBP2	chr17	75840699	75860335
WBP4_chr13_41056509_41089006	1/0	t0001	1258	346	72	60	173	9	31	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/1	t0002	1258	43	8	8	21	3	2	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0003	1258	10	0	0	8	0	2	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0004	1258	7	7	0	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0005	1258	4	0	0	0	0	4	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0006	1258	2	0	0	0	2	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0007	1258	2	0	0	2	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0008	1258	2	0	0	2	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0009	1258	1	0	0	1	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0010	1258	1	0	0	1	0	0	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0011	1258	1	0	0	0	0	1	copy fasta	WBP4	chr13	41056509	41089006
WBP4_chr13_41056509_41089006	0/0	t0012	1258	1	1	0	0	0	0	copy fasta	WBP4	chr13	41056509	41089006
WDCP_chr2_24024347_24052391	0/0	t0001	1683	174	29	42	74	7	22	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	1/1	t0002	1683	78	33	12	15	7	9	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0003	1681	23	4	8	4	0	7	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0004	1683	16	10	2	1	2	1	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0005	1682	10	4	3	1	0	2	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0006	1684	10	1	4	2	1	2	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0007	1682	2	1	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0008	1683	2	1	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0009	1684	2	0	0	2	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0010	1683	1	0	0	0	1	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0011	1682	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0012	1683	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0013	1683	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0014	1683	1	0	0	0	0	1	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0015	1683	1	0	1	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0016	1683	1	0	0	1	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0017	1683	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDCP_chr2_24024347_24052391	0/0	t0018	1683	1	1	0	0	0	0	copy fasta	WDCP	chr2	24024347	24052391
WDFY1_chr2_223870348_223950335	1/0	t0001	3375	67	11	2	52	0	1	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/1	t0002	3377	60	16	16	16	4	7	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0003	3376	46	8	6	28	0	4	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0004	3377	39	0	7	27	0	5	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0005	3377	36	0	5	18	1	12	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0006	3377	22	0	8	8	1	5	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0007	3376	20	0	1	19	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0008	3377	18	0	0	18	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0009	3376	14	13	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0010	3375	10	10	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0011	3376	8	7	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335