JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
WDFY1_chr2_223870348_223950335	0/0	t0012	3378	6	0	0	6	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0013	3374	6	6	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0014	3375	4	4	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0015	3377	4	4	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0016	3377	2	2	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0017	3376	2	2	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0018	3376	2	2	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0019	3375	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0020	3377	1	0	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0021	3378	1	0	0	1	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0022	3377	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0023	3377	1	0	0	1	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0024	3378	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0025	3375	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0026	3376	1	0	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0027	3377	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0028	3376	1	0	1	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0029	3376	1	0	0	1	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0030	3377	1	0	0	1	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0031	3374	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY1_chr2_223870348_223950335	0/0	t0032	3376	1	1	0	0	0	0	copy fasta	WDFY1	chr2	223870348	223950335
WDFY2_chr13_51579462_51772709	0/1	t0001	8167	90	27	7	41	5	9	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0002	8154	39	1	8	21	5	4	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0003	8167	36	3	11	14	3	5	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0004	8167	25	10	13	0	0	2	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0005	8167	8	7	1	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0006	8167	7	0	0	6	0	1	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0007	8167	6	0	5	1	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0008	8167	6	0	0	6	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	1/0	t0009	8167	5	2	2	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0010	8167	5	5	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0011	8154	4	0	0	4	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0012	8167	3	2	1	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0013	8167	3	3	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0014	8167	3	0	2	0	0	1	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0015	8167	3	0	2	0	1	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0016	8167	2	2	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0017	8167	2	2	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0018	8167	2	2	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0019	8154	2	0	0	0	0	2	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0020	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0021	8167	1	0	1	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0022	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0023	8167	1	0	1	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0024	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0025	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0026	8167	1	0	0	0	0	1	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0027	8167	1	0	1	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0028	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709
WDFY2_chr13_51579462_51772709	0/0	t0029	8167	1	1	0	0	0	0	copy fasta	WDFY2	chr13	51579462	51772709